Dear Tandrima,
Have a look report RPTERL00 to see if you have your owned define messages or not. You can run the report thru T-Code: SA38.
For 13 shifts I don't think so late coming / early going is related to shifts I think it's related to daily work schedule. I think you can check just the first clock-in / last ****-out with employees daily work schedule. So maybe you PCR can be a general rule.
Regards,
Omid